A marvelously detailed, well-commented thesis package (even if it is in one document): "Using LaTeX for thesis writing..."

Using LaTeX for thesis writing at the University of Washington.

The author mentions he set it up as a single file in order to make file-sharing simpler, but it doesn't seem entirely clear how to set it up in the multiple-TeX-file format he suggests.

The Lazy Mathematician's blog covering drawing, lists, graphs, plots, functions, and page layout.

The Lazy Mathematician's blog.

I haven't delved into this yet, but I'm keeping it for later reference.